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@li-lab-genetics

Li Lab (Statistical Genetics and Bioinformatics)

Software created and maintained by members of the Li Lab
README.md

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  1. STAAR STAAR Public

    An R package for performing STAAR procedure in whole-genome sequencing studies

    C++ 98 48

  2. STAARpipeline STAARpipeline Public

    An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline

    R 71 25

  3. staarpipeline-rap staarpipeline-rap Public

    An app for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline in UK Biobank RAP

    R 6 4

  4. STAARpipelinePheWAS STAARpipelinePheWAS Public

    STAAR Pipeline for Analyzing Whole-Genome/Whole-Exome Sequencing Data in PheWAS (PheWAS Version of STAARpipeline)

    R 9 2

  5. MetaSTAARlite MetaSTAARlite Public

    A lightweight R package for performing association meta-analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using MetaSTAARlite pipeline

    R 5 3

  6. IGES_2025_Education_Workshop IGES_2025_Education_Workshop Public

    Contains code to conduct analyses presented in the IGES 2025 Educational Workshop: Practical Tutorial – A Walkthrough of Cross-Biobank Analysis.

    HTML 15 2

Repositories

Showing 10 of 16 repositories
  • MetaSTAARlite Public

    A lightweight R package for performing association meta-analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using MetaSTAARlite pipeline

    li-lab-genetics/MetaSTAARlite’s past year of commit activity
    R 5 GPL-3.0 3 0 0 Updated Apr 9, 2026
  • STAARpipelinePheWAS Public

    STAAR Pipeline for Analyzing Whole-Genome/Whole-Exome Sequencing Data in PheWAS (PheWAS Version of STAARpipeline)

    li-lab-genetics/STAARpipelinePheWAS’s past year of commit activity
    R 9 GPL-3.0 2 1 0 Updated Feb 5, 2026
  • COMPASS Public
    li-lab-genetics/COMPASS’s past year of commit activity
    R 2 AGPL-3.0 0 0 0 Updated Jan 18, 2026
  • staarpipeline-rap-batch Public
    li-lab-genetics/staarpipeline-rap-batch’s past year of commit activity
    R 1 MIT 2 0 0 Updated Dec 24, 2025
  • STAARpipelinePheWAS-rap-batch Public
    li-lab-genetics/STAARpipelinePheWAS-rap-batch’s past year of commit activity
    R 1 MIT 0 0 0 Updated Dec 16, 2025
  • MetaSTAARlite-Manuscript Public
    li-lab-genetics/MetaSTAARlite-Manuscript’s past year of commit activity
    R 0 MIT 0 0 0 Updated Dec 1, 2025
  • IGES_2025_Education_Workshop Public

    Contains code to conduct analyses presented in the IGES 2025 Educational Workshop: Practical Tutorial – A Walkthrough of Cross-Biobank Analysis.

    li-lab-genetics/IGES_2025_Education_Workshop’s past year of commit activity
    HTML 15 2 0 0 Updated Aug 29, 2025
  • STAARpipeline Public

    An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline

    li-lab-genetics/STAARpipeline’s past year of commit activity
    R 71 GPL-3.0 25 4 0 Updated Mar 23, 2025
  • STAAR Public

    An R package for performing STAAR procedure in whole-genome sequencing studies

    li-lab-genetics/STAAR’s past year of commit activity
    C++ 98 GPL-3.0 48 3 1 Updated Feb 9, 2025
  • favorannotator-rap Public

    An app for automatically functionally annotating the variants of whole-genome/whole-exome sequencing (WGS/WES) studies and integrating the functional annotations with the genotype data using FAVORannotator in UK Biobank RAP

    li-lab-genetics/favorannotator-rap’s past year of commit activity
    R 4 MIT 1 0 0 Updated Jan 11, 2025
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