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Issues with bam index, padding, plotting and getting gene counts

Status: Open.

#116 In CharlesJB/metagene;

· mpaya opened on Dec 19, 2018

Unit test failure

bug

Status: Open.

#115 In CharlesJB/metagene;

· ericfournier2 opened on Sep 28, 2018

Build facility for different main-region/padding scaling

enhancement

Status: Open.

#114 In CharlesJB/metagene;

· ericfournier2 opened on Aug 10, 2018

Allow proportional padding

enhancement

Status: Open.

#113 In CharlesJB/metagene;

· ericfournier2 opened on Aug 10, 2018

Provide facilities for varying metagene padding

enhancement

Status: Open.

#112 In CharlesJB/metagene;

· ericfournier2 opened on Aug 10, 2018

Make sure kalisto bams do not have a large performance cost

question

Status: Open.

#111 In CharlesJB/metagene;

· ericfournier2 opened on Jul 18, 2018

Improve sampling performance

enhancement

Status: Open.

#110 In CharlesJB/metagene;

· ericfournier2 opened on Jul 4, 2018

rnaseq produce erroneous tables if a bam file is part of multiple design groups

bug

Status: Open.

#106 In CharlesJB/metagene;

· ericfournier2 opened on Jun 5, 2018

get_matrices() does not flip regions.

bug

Status: Open.

#104 In CharlesJB/metagene;

· ericfournier2 opened on May 31, 2018

bam file doesn't exist error

Status: Open.

#103 In CharlesJB/metagene;

· yeqiaoz opened on Feb 6, 2018

Error while producing metagene plot

Status: Open.

#99 In CharlesJB/metagene;

· ytytytwang opened on Jan 10, 2018

values of bin are not the same in matrice and data.table

Status: Open.

#83 In CharlesJB/metagene;

· lippensc opened on Aug 31, 2017